Workflow and Protocols

 The general recommended workflow for this project is shown in the diagram below. Task-specific workflows can be accessed in the table below the diagram. Alternatively, the entire digitization manual can be downloaded by clicking the button below. Please note that the workflow and protocols are general and may require adjustment before use at your institution.

Download Entire Manual

Generalized Workflow

0. Prepare collection for imaging:

• How to prepare your collection for imaging
• Equipment recommendations

1. Barcode specimens:

• Barcode recommendations
• Barcoding protocol    last updated June 19, 2019

​2. Image specimens:

• Imaging station setup documentation
• Imaging protocol (Mac OS)    last updated May 17, 2019
• Imaging protocol (Windows OS)    last updated May 17, 2019
• Combined barcoding & imaging protocol (Mac OS)    last updated June 19, 2019
• Combined barcoding & imaging protocol (Windows OS)    last updated June 19, 2019
• Imaging station setup checklist

3. Edit/convert images:

• Image processing protocol and checklist (Mac OS)    last updated January 23, 2019
• Image processing protocol and checklist (Windows OS)    last updated January 23, 2019

4. Upload JPEGs to CyVerse and load into CCH2:

• Protocol for set up and upload of images to CyVerse, then CCH2

5. Update catalog numbers:

• Protocol for associating barcode (catalog) numbers with accession numbers​

Transcribe data:

• Guide to transcribing label data in CCH2

Georeference specimen records:

• Georeferencing protocol
• Other georeferencing resources

Score phenology:

• Phenological scoring tools

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To see resources from other specimen digitization projects, click on one of the project websites below: